1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagaatcgatttatccatgatcctgcttaaagatcgcttcctctcttttttgctgttaatttaactaatctgaattcaatttgtgtaactgcgtcgatgaattaatgtgtttgctaatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGC
species | Oryza sativa |
transcript | LOC_Os02g47200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTGGAAGTGGTCTTGCTT-AGA -CATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACEST: gi|88577776|gb|CI674385.1|CI674385
genomic: AGTGGAAGTGGTCTTGCTTCAGAgtaagaatcg ... taatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCAC
EST: CGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGA CCATGGGAGACGTACTCGCCGGACACGACGATCGACCEST: gi|218492808|gb|FG966634.1|FG966634
genomic: CGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGAgtaagaatcg ... taatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACC
EST: CGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGA CCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCAC
genomic: CGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGAgtaagaatcg ... taatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCAC
ctgaattcaatttgtgtaactgcgtcgatgaattaatgtgtttgctaatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGC
tgctaat putative branch site (score: 3)
atgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatcgatttatccatgatcctgcttaaagatcgcttcctctcttttttgctgttaatttaactaatctgaattcaatttgtgtaactgcgtcgatgaattaatgtgtttgctaatttgcagCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT