1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgggtgatttttcttttttttgtttgtcaaaagtaagaagaatattctctttttttttgggtgtgttcttcgagaacttcttgattgatttttgctctgtgacgcttgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG
species | Oryza sativa |
transcript | LOC_Os02g47110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|66919065|gb|CX105913.1|CX105913
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|88359999|gb|CI608513.1|CI608513
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|2310427|gb|C26582.1|C26582
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|88311186|gb|CI570260.1|CI570260
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGAGGGCAAAACCACCATCCTGTACAAGEST: gi|2310382|gb|C26537.1|C26537
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|33692402|gb|CF320641.1|CF320641
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|88405611|gb|CI588817.1|CI588817
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGEST: gi|88825559|gb|CI776124.1|CI776124
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
EST: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGG GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
genomic: AGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGgtatgggtga ... tgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAG
tgtgttcttcgagaacttcttgattgatttttgctctgtgacgcttgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG
gattgat putative branch site (score: 4)
cttgctcttt putative PPT
attgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgggtgatttttcttttttttgtttgtcaaaagtaagaagaatattctctttttttttgggtgtgttcttcgagaacttcttgattgatttttgctctgtgacgcttgctctttagGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC