1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttaagcggcgcactgtttgcatgtgtgcatcgttttatgtttgtttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
species | Oryza sativa |
transcript | LOC_Os02g46460.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGCCGGCGG-CTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|117249165|gb|CT862971.1|CT862971
genomic: GGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGEST: gi|87005457|gb|CI285679.1|CI285679
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
tttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
ccttgac putative branch site (score: 4)
tttttattttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaagcggcgcactgtttgcatgtgtgcatcgttttatgtttgtttagaattattcttgaaggccttgacacctttttattttgtgtgtgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGGTGTTGTTCCTGACGAGGGTGCTGCAGCAGAGCAACGGCGACGCCGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA