1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacttccactcttccagttcttacacatttaattgtaataatatggttgacatgaaaatcattcatcttgttttgttaatatggttttatgttcatgcagTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAG
species | Oryza sativa |
transcript | LOC_Os02g45110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAG TTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTEST: gi|44666680|gb|CR280114.1|CR280114
genomic: TAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGgtctgttttc ... gttcatgcagTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACT
EST: TAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAG -TTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACT
genomic: TAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGgtctgttttc ... gttcatgcagTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACT
gttgacatgaaaatcattcatcttgttttgttaatatggttttatgttcatgcagTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAG
tgttaat putative branch site (score: 14)
ttgttttgttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttccactcttccagttcttacacatttaattgtaataatatggttgacatgaaaatcattcatcttgttttgttaatatggttttatgttcatgcagTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- cttccac
- - - - - - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcattca