Sequence
atgc intronic sequence ATGC exonic sequencegtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattgagcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g42970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G354151_T01 (Zea mays), 3'ss of exon 3
gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattga-gcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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----gtaagaagtacattaattctgaaacaagtatatatatacatacatag--ctgctgctaaatagacacatgcattttggaatgggcatgcagAGAAGTGCAAGATCGGGACGGAGGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACCCGCACAAACCGGGCGACCAC
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G315140_T01 (Zea mays), 3'ss of exon 2
---------------------------------------------gtaattagcatgca--tgcaagttgatcgaagaatcaaaaaaatcaaa-gttaggtttgcgat--tgaattgagcatccaacatgtacaaatattg--cagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gcaagaaataaatacattccgaaagcaagtagttgatgcaatggagttggtagtagacaattacatgcatatatacacgtgctgctaattaaatattagactcacaatgatcaattg-gcatcacacatgcatttggaatgggcagAGAAGTGCAAGATTGGGATGGAGGAGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACTCGCACCAACCGGGCGACCAC
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S1_447V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------------gtaattagcatgcatgcaagttga--tcgaagaatcaaa--aaaatcaaagtt-aggtttgcgattgaattgagcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGG--------CATGGAAGAA-CAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gtaagaatcgatcagaatcctcggtgtactatgtatgacaccagactagaaaacacgtcctcacatgcttcgttgccccatttcagtctattaagattgaactcatggtgtgttcgagccctgggattgcaattagattccatgtccactacgtacacggacaagtaaccccgatgtggtcatcagAAGTGTGCAGGATTGGGGACGACCCACCAGAGAATCAAAACGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCCTCGGGCAATCGAGCGAACCG---------
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S102_187V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattga-------------attga--gcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGG---------CATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG-
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gcatgaacatgctcatttgaaggacatatttgagtt--tcgaatttctcccacatagagtttttgttttgggattggtggatatcttgatactgatgatattcaatttttgtggcgatgtcaggggtatgcagGATCGGGGACGTCACCACCGAAGACCAGAGTGACTGGTACTTCTTCAGCCACAAGGATAAGAAATATCCTTGCGGGAACCGTGCAAATCGAGCCACCGCC
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S6_458V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaattgagcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGGCA---------TGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gtaagccaacgaacccacattttgcaggatttcattaacgttggttgaggttagaaaactggaactcgctttagttcgaggaatatataa-atagatatggatatatatatatatatatatatatgagaatactctaagtactgataacaccatctg-tacttgcggcgacatcagAGGTGTGCAGAATTGGCGACGACGCACCCGAGAATCAGAGCGACTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCTACTGGAAACCGCGCAAACCG---------
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------------------gtaattagcatgca----tgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaa-ttgagcatccaacatgta-----caaatattgcagAGAAG---TGCAAGATT--GGC-------ATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtaattagcatgcatgcaagttgatc-gaagaatcaaaaaaatcaaagttaggtttgcgattgaattgagcat--ccaacatgta-caaatattgcagAGAAGTGCAAGATT---GGCA------TGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gcaagatcatcacactcaagtgccaacctgaagcacgtgcatgtacattgtaatccaaggaagagtattgggcattgctaactgatagcgtccattgcagAGGTATGCAAGATTCCAGGCGACCATTCCGTGAACCAGAACAACTGGTACTTCTTTAGCCATAAGGACAAGAAGTACCCCACCGGCAACCGCGCCAACCG---------
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
-----gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttagg-----tttgcgattgaattgagcatcc-------aacatgtacaaatattg-----------cagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gtaagacggtcatccctcaagcttctcatttcggaaa--aaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
upper sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ37712 (Selaginella moellendorffii), 3'ss of exon 1
-----gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttagg-----tttgcgattgaattgagcatcc-------aacatgtacaaatattg-----------cagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
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gtaagacggtcatccctcaagcttctcatttcgggaaa-aaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcaaagttaggtttgcgattgaattgagcatccaacatgtacaaatattgcagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
tacaaatatt TA-rich tract