1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtaatcggagccctccacatgggtaattttgcttgagttttttttagggggggtggctgcggtgctgattcgttgttcatctttgtttgttctgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCGATGGAAGTCACATGCCGCGCCGCTGTCCGCTCAGGAGGCGCCCAAAGG
species | Oryza sativa |
transcript | LOC_Os02g42550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCEST: gi|88316795|gb|CI624237.1|CI624237
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCEST: gi|88442820|gb|CI694223.1|CI694223
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCEST: gi|88321827|gb|CI672972.1|CI672972
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCEST: gi|88718861|gb|CI742371.1|CI742371
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCEST: gi|86851008|gb|CI311226.1|CI311226
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
EST: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGG TGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
genomic: CCCGATGCAAGCGTCCGCGCGCCTCTACACCGCCGCCGCATCCAAGCGGGgtgagtaatc ... tgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCC
ggggggtggctgcggtgctgattcgttgttcatctttgtttgttctgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCGATGGAAGTCACATGCCGCGCCGCTGTCCGCTCAGGAGGCGCCCAAAGG
tgctgat putative branch site (score: 10)
tctttgtttgttctgt putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaatcggagccctccacatgggtaattttgcttgagttttttttagggggggtggctgcggtgctgattcgttgttcatctttgtttgttctgtttcccagTGATTGCGGGCGTCTCTAGCACGATCTCGCGCTCGTGCCACCGGACTTGCCGATGGAAGTCACATGCCGCGCCGCTGTCCGCTCAGGAGGCGCCCAAAGG
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