Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctgccttgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g42320.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 2
----------------gtatgt-gctgccttgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgt-----ggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
                 ||  | |||  ||||| | || | | |   ||||||||  |   | | | |  ||| ||||    | || ||   ||||| |     |  ||||| | | ||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||||||||
gttcgtgctcccttccctacatcgctcgcttgctcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttttttcggttgattttgct-gcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G824831_T02 (Zea mays), 3'ss of exon 2
-----gtatgtgctgcct-tgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
     | || |   || |   ||||| |  || |  ||||||||| |  || | | |  ||| ||||    | ||| |   |||||  |  ||||| ||| |||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| || |||||||||||||
tccctgcatctctcgcttgctcgccttctccgtc--gagatcggggg--attttgcgtcgttacggtggtttgatccggattttttcggttgattttgtt-gcagTCCGTCGGGGAAGCTCGTGCAGATTGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCGCTCGGGATCAAAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G824831_T08 (Zea mays), 3'ss of exon 2
------------------gtatgtgctgcct-tgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
                  | || |   || |   ||||| |  || |  ||||||||| |  || | | |  ||| ||||    | ||| |   |||||  |  ||||| ||| |||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| || |||||||||||||
gttcgtgctcctctccctgcatctctcgcttgctcgccttctccgtc--gagatcggggg--attttgcgtcgttacggtggtttgatccggattttttcggttgattttgtt-gcagTCCGTCGGGGAAGCTCGTGCAGATTGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCGCTCGGGATCAAAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G850355_T08 (Zea mays), 3'ss of exon 1
----------------gtatgt-gctgccttgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
                 ||  | |||  ||| | | || | | |   ||||||||  |   | | | |  ||| ||||    | || ||   |||||  |  |||||| | |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||||||||
gttcgtgctcccctcgctacatcgctcgcttactcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttc-tctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G824831_T04 (Zea mays), 3'ss of exon 2
------------------gtatgtgctgcct-tgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
                  | || |   || |   ||||| |  || |  ||||||||| |  || | | |  ||| ||||    | ||| |   |||||  |  ||||||||| |||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| || |||||||||||||
gttcgtgctcctctccctgcatctctcgcttgctcgccttctccgtc--gagatcggggg--attttgcgtcgttacggtggtttgatccggattttttcggttgatttcgtt-gcagTCCGTCGGGGAAGCTCGTGCAGATTGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCGCTCGGGATCAAAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G850355_T01 (Zea mays), 3'ss of exon 2
-gtatgt-gctgccttgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
  ||  | |||  ||| | | || | | |   ||||||||  |   | | | |  ||| ||||    | || ||   |||||  |  |||||| | |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||||||||
gctacatcgctcgcttactcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttc-tctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88344734|gb|CI624385.1|CI624385
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGGGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|58594931|gb|CF993239.1|CF993239
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88394630|gb|CI605971.1|CI605971
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCAACACCTTCAG                         C
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcag-
EST: gi|88394630|gb|CI605971.1|CI605971
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCAACACCTTCAG                         C
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcag-
EST: gi|88695235|gb|CI739273.1|CI739273
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCANCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|87011125|gb|CI287802.1|CI287802
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|87011186|gb|CI287863.1|CI287863
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|58599900|gb|CK010428.1|CK010428
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|33658810|gb|CF281423.1|CF281423
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|428178|gb|D24326.1|D24326
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|86848618|gb|CI293933.1|CI293933
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88299773|gb|CI577275.1|CI577275
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88305149|gb|CI652087.1|CI652087
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|58590935|gb|CF989243.1|CF989243
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGGGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88759914|gb|CI769470.1|CI769470
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88309484|gb|CI655852.1|CI655852
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88412151|gb|CI573427.1|CI573427
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|33680962|gb|CF309201.1|CF309201
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88444698|gb|CI694934.1|CI694934
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88826745|gb|CI777310.1|CI777310
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88397120|gb|CI593332.1|CI593332
EST:     TCGGCGGGCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88741359|gb|CI764867.1|CI764867
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88590186|gb|CI709019.1|CI709019
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|55413225|gb|CV725601.1|CV725601
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88421484|gb|CI618608.1|CI618608
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         C
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcag-
EST: gi|88421484|gb|CI618608.1|CI618608
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         C
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcag-
EST: gi|86848709|gb|CI293996.1|CI293996
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88577098|gb|CI673653.1|CI673653
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88578215|gb|CI687134.1|CI687134
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|95101478|gb|CI693228.1|CI693228
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88395675|gb|CI590690.1|CI590690
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88414830|gb|CI604188.1|CI604188
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|3766856|gb|AU030966.1|AU030966
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|55413193|gb|CV725569.1|CV725569
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88391828|gb|CI603347.1|CI603347
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCCGGTCGGAT
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGC-GGTCGGAT
EST: gi|88745867|gb|CI769227.1|CI769227
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGNGGTCGGATT
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88355030|gb|CI615911.1|CI615911
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88294492|gb|CI667466.1|CI667466
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|87023870|gb|CI288223.1|CI288223
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88426118|gb|CI604407.1|CI604407
EST:     TCGGCGGCCATGGGAGACAGCCAGTATTCCTTCTCCCTCACCAACTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGGGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88320096|gb|CI639459.1|CI639459
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88340299|gb|CI652648.1|CI652648
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|86847609|gb|CI288727.1|CI288727
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88353714|gb|CI633105.1|CI633105
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|86901082|gb|CI306271.1|CI306271
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
EST: gi|88588652|gb|CI706488.1|CI706488
EST:     TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAG                         CCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC
genomic: TCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGgtatgtgctg ... tcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
                                           tttcgttt  CT-rich tract
                               tttttgt  TA-rich tract