1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcccaaattaaaccgatcagatcatgcacgctcaacacaaaactgaatcaaggctagcgaaaggaacttaacacggttgtgtgcgcgtgatcgagcatggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGTGTCGCTGATCAGGGCGGTGCTGTACATCATCGCGCAGTGCCTGGGCGC
species | Oryza sativa |
transcript | LOC_Os02g41860.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCEST: gi|33665208|gb|CF296175.1|CF296175
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACC
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|88728425|gb|CI751935.1|CI751935
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: ATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|33661591|gb|CF292558.1|CF292558
genomic: ATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGEST: gi|29644248|gb|CB649255.1|CB649255
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|117222050|gb|CT852596.1|CT852596
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|29686713|gb|CB682988.1|CB682988
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|88456051|gb|CI567767.1|CI567767
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: TTCGGCGGCATGATCTT-AGTCCTCGTCTACTGCACCGACGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGATGTTCCTGGCGAGGAAGGEST: gi|58613123|gb|CK040835.1|CK040835
genomic: TTCGGCGGCATGATCTTCA-TCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: GCACCG-CGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|29687215|gb|CB683490.1|CB683490
genomic: GCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|33662304|gb|CF293271.1|CF293271
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|86888563|gb|CI305631.1|CI305631
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGACGGCATCTCAG GTGGGCACATCAACCCGEST: gi|58655264|gb|CK043944.1|CK043944
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|33666008|gb|CF296975.1|CF296975
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGEST: gi|33663061|gb|CF294028.1|CF294028
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGEST: gi|88349128|gb|CI678098.1|CI678098
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAG
EST: CTTCGGCGGNATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATTAAACCGGCGGTGAEST: gi|9884532|gb|BE607365.1|BE607365
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGA
EST: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAG GTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
genomic: CTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCAGgtcccaaatt ... catggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGG
aggctagcgaaaggaacttaacacggttgtgtgcgcgtgatcgagcatggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGTGTCGCTGATCAGGGCGGTGCTGTACATCATCGCGCAGTGCCTGGGCGC
acttaac putative branch site (score: 46)
aacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcccaaattaaaccgatcagatcatgcacgctcaacacaaaactgaatcaaggctagcgaaaggaacttaacacggttgtgtgcgcgtgatcgagcatggtgcagGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGAGGAAGGTGTCGCTGATCAGGGCGGTGCTGTACATCATCGCGCAGTGCCTGGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT