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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcaatcatatatctgaccaagtttttctgaacgtgttatatgtttttttttagtgagctctgaactgaaattgacatgtctatcgctctgttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCCGGCGGAGGCGACGCGCGCGGCGATGCTCGTCCGCATCAACACCCTCCTC

Basic information

species Oryza sativa
transcript LOC_Os02g41650.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672801|gb|CB669076.1|CB669076
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29625882|gb|CB630893.1|CB630893
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|88739265|gb|CI762773.1|CI762773
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|88311918|gb|CI577524.1|CI577524
EST:     AGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: AGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29631415|gb|CB636424.1|CB636424
EST:     TGCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACC
EST: gi|29642575|gb|CB647582.1|CB647582
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAT                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|117227340|gb|CT846549.1|CT846549
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29637168|gb|CB642177.1|CB642177
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29636975|gb|CB641984.1|CB641984
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29643965|gb|CB648972.1|CB648972
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29644524|gb|CB649531.1|CB649531
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCTCGCTCCAGAGGGAGCTCATCAT                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|7274047|gb|C99335.2|C99335
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|8858675|gb|AU095993.1|AU095993
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|88734621|gb|CI758129.1|CI758129
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|11026264|gb|AU162865.1|AU162865
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGGACGGCCACGTTCTGC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCG-ACGGCCACGTTCTGC
EST: gi|29631545|gb|CB636554.1|CB636554
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCT
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCT
EST: gi|29643641|gb|CB648648.1|CB648648
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29685159|gb|CB681434.1|CB681434
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29627608|gb|CB632619.1|CB632619
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29641736|gb|CB646743.1|CB646743
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29680464|gb|CB676739.1|CB676739
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29643539|gb|CB648546.1|CB648546
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29630359|gb|CB635368.1|CB635368
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29688912|gb|CB685187.1|CB685187
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29637782|gb|CB642791.1|CB642791
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29640798|gb|CB645805.1|CB645805
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29657477|gb|CB653752.1|CB653752
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29631698|gb|CB636707.1|CB636707
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29643642|gb|CB648649.1|CB648649
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29673035|gb|CB669310.1|CB669310
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGACGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCCGGCAC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACC-GGCAC
EST: gi|29632926|gb|CB637935.1|CB637935
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|58605518|gb|CK033551.1|CK033551
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29631580|gb|CB636589.1|CB636589
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|23380653|gb|BU667084.1|BU667084
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29685529|gb|CB681804.1|CB681804
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29688539|gb|CB684814.1|CB684814
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29641387|gb|CB646394.1|CB646394
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29672837|gb|CB669112.1|CB669112
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|58672746|gb|CK061432.1|CK061432
EST:     TCCCACCGCCGAACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCA
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCA
EST: gi|29643356|gb|CB648363.1|CB648363
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29673621|gb|CB669896.1|CB669896
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|58594777|gb|CF993085.1|CF993085
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCT
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCT
EST: gi|29680030|gb|CB676305.1|CB676305
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|8856156|gb|AU093474.1|AU093474
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29625079|gb|CB630090.1|CB630090
EST:     GGGCGGCGCGCTCCTTAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: GGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|58605110|gb|CK033143.1|CK033143
EST:     TCCCACCGCCGCAGCAGGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|11026244|gb|AU162845.1|AU162845
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29682227|gb|CB678502.1|CB678502
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|38474040|gb|CF958172.1|CF958172
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACG
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACG
EST: gi|3768495|gb|AU032522.1|AU032522
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29622895|gb|CB627906.1|CB627906
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29663402|gb|CB659677.1|CB659677
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|11026246|gb|AU162847.1|AU162847
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29641408|gb|CB646415.1|CB646415
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29640443|gb|CB645452.1|CB645452
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29636716|gb|CB641725.1|CB641725
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|29622613|gb|CB627624.1|CB627624
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
EST: gi|88732014|gb|CI757191.1|CI757191
EST:     TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAG                         ATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC
genomic: TCCCACCGCCGCACCAAGGAGGGCGGCGCGCTCCAGAGGGAGCTCATCAGgtgacaaatc ... gttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttagtgagctctgaactgaaattgacatgtctatcgctctgttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCCGGCGGAGGCGACGCGCGCGGCGATGCTCGTCCGCATCAACACCCTCCTC
                        aattgac  putative branch site (score: 3)
                                         ctctgtttt  putative PPT
                                            tgttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgcaatcatatatctgaccaagtttttctgaacgtgttatatgtttttttttagtgagctctgaactgaaattgacatgtctatcgctctgttttaacagATTCCTCAATGCCGGCGCCTTCGGCACCGGCACCGACGGCCACGTTCTGCCGGCGGAGGCGACGCGCGCGGCGATGCTCGTCCGCATCAACACCCTCCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC