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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctgtcgcgtactggggtcttaattaatttactagtgaccgtgctcatcttcttcttcttcctcctccttgcagGGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTCTTGTCCTTTGGCCCGGGCGGAGTGGTTTCTTTCTTGCACGGGACGTGCTCGACGGAATGCC

Basic information

species Oryza sativa
transcript LOC_Os02g41550.2
intron # 1
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29634360|gb|CB639369.1|CB639369
EST:     TTGGTGCGCCCACCCTCGATCTTGGCCGCTTGCGCGCTTCCACGATCTGA                         GGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTTTTGTTCTTTGGC
genomic: TTGGTGCGCCCACCCTCGATCTTGGCCGCTTGCGCGCTTCCACGATCTGAgtatcctgtc ... ctccttgcagGGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTCTTGTCCTTTGGC
EST: gi|29634359|gb|CB639368.1|CB639368
EST:     TTGGTGCGCCCACCCTCGATCTTGGCCGCTTGCGCGCTTCCACGATCTGA                         GGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTCTTGTCCTTTGGC
genomic: TTGGTGCGCCCACCCTCGATCTTGGCCGCTTGCGCGCTTCCACGATCTGAgtatcctgtc ... ctccttgcagGGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTCTTGTCCTTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattaatttactagtgaccgtgctcatcttcttcttcttcctcctccttgcagGGGTTTCTGGTCCGAGGCGGCCATCAAGATCCGTGCTTCTTGTCCTTTGGCCCGGGCGGAGTGGTTTCTTTCTTGCACGGGACGTGCTCGACGGAATGCC
 ttcctcctc  putative branch site 
                   ccgtgctcatcttctt  putative PPT
     taatttacta  TA-rich tract