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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggatgtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA

Basic information

species Oryza sativa
transcript LOC_Os02g40830.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G094614_T01 (Zea mays), 3'ss of exon 1
gtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggat-gtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA
                     | ||  | | ||||||  | |       |||  |   | || ||| |   ||| || | |   |   ||| | |||  || || | |   ||||||| |||||| || ||||| | |||||||||  || ||||||| || |||||||||||||||||||||||||||||||| || || ||  | ||||||||  || ||||||||||| | ||||| |
-----------------gtgcctagcgctcccagattggcactttgccctcccattagtatt-gcgtgggatttattcgtgctat---tttggaggctaggactgatggattagggtttgtggattgtttgggtct-gcagGGCGCATAGTTGATGGGTAAATACGGGATCAACGTGCCCAGGGGCGCGGCGGCTGGGTCCGTACATGAGGTCAAGGACGCCTTGAAGAACATGTTCCCCA

upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G064695_T03 (Zea mays), 3'ss of exon 1
gtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggat-gtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA
        |   ||  | |  ||||||   |||  || ||   ||||      ||| | | ||||| |   ||| || | |   |   ||| | |||  || || | |   ||||||| || ||| || ||||| | ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| || || ||  | ||||||||  || ||||||||||| | ||||| |
--------gtgcccagcgctcccagattg-gcactttgccctcccat-----tttcaagtattgcgtgggatttattcgtgctat---tttggaggctgggactgatggattagggtttgtcgattgtttgggtct-gcagGGCGCGGAGTTGATGGGTAAATACGGGATCAACGTGCCCAGGGGCGCGGCGGCTGGGTCCGTACACGAGGTCAAGGACGCCTTGAAGAACATGTTCCCCA

upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G041429_T01 (Zea mays), 3'ss of exon 1
gtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggat-gtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA
        |   ||  | |  ||||||   |||  || ||   ||||      ||| | | ||||| |   ||| || | |   |   ||| | |||  || || | |   ||||||| |||||| || ||||| | | ||||||||||| ||||||| || |||||||||||||||||||||||||||||||| || || ||  | ||||||||  || ||||||||||| | ||||| |
--------gtgcccagcgctcccagattg-gcactttgccctcccat-----tttcaagtattgcgtgggatttattcgtgctat---tttggaggctgggactgatggattagggtttgtggattgtttgggtct-gtagGGCGCGGAGTTGATGGGTAAATACGGGATCAACGTGCCCAGGGGCGCGGCGGCTGGGTCCGTACATGAGGTCAAGGACGCCTTGAAGAACATGTTCCCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88389916|gb|CI626685.1|CI626685
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88350391|gb|CI622716.1|CI622716
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88294732|gb|CI604604.1|CI604604
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|66913068|gb|CX099916.1|CX099916
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88394702|gb|CI622576.1|CI622576
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88573012|gb|CI664583.1|CI664583
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88426486|gb|CI576728.1|CI576728
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58681651|gb|CK070338.1|CK070338
EST:     GAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTNACCAG                         G-CGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCANGGGCGCGGC
genomic: GAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGT-ACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGC
EST: gi|88361440|gb|CI605221.1|CI605221
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88693364|gb|CI736939.1|CI736939
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88412220|gb|CI573496.1|CI573496
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|55434355|gb|CV730299.1|CV730299
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88401546|gb|CI588487.1|CI588487
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88401511|gb|CI588452.1|CI588452
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88407435|gb|CI586276.1|CI586276
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88377689|gb|CI605524.1|CI605524
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58668786|gb|CK057472.1|CK057472
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88363539|gb|CI618100.1|CI618100
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88721277|gb|CI744576.1|CI744576
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|29662328|gb|CB658603.1|CB658603
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88313276|gb|CI594906.1|CI594906
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58588874|gb|CF987182.1|CF987182
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|4714828|gb|AU055945.1|AU055945
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGA-CTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88301023|gb|CI592203.1|CI592203
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|29662110|gb|CB658385.1|CB658385
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|38478366|gb|CF962499.1|CF962499
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAN                         GGCGCGGAGGTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88718253|gb|CI741342.1|CI741342
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88359730|gb|CI622420.1|CI622420
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGC
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGC-GCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGC
EST: gi|58684186|gb|CK072873.1|CK072873
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58588447|gb|CF986755.1|CF986755
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGTGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|33688588|gb|CF316827.1|CF316827
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88729794|gb|CI753304.1|CI753304
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58594936|gb|CF993244.1|CF993244
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         TGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGTGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88391665|gb|CI600854.1|CI600854
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88390790|gb|CI611016.1|CI611016
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88298871|gb|CI567874.1|CI567874
EST:     GGAAATGGCAGCACCAGCAGCTCCGTCGCCTCAAAATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88728966|gb|CI752476.1|CI752476
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|4880970|gb|AU065269.1|AU065269
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGA-CTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|38477849|gb|CF961982.1|CF961982
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGTGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88344882|gb|CI625728.1|CI625728
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|58592643|gb|CF990951.1|CF990951
EST:     GAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCGAG                         G-CGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGTGGCGCGGC
genomic: GAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACC-AGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGC
EST: gi|88387917|gb|CI588005.1|CI588005
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCAAGAGTACCAG                         GGCCGCGGAGCTGATGGGGAAGTACGGGATAAACGTGCCCAGGGGCGCGGC
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGC-GCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGC
EST: gi|88362824|gb|CI614180.1|CI614180
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|428186|gb|D24334.1|D24334
EST:     GGAAATGGCAGTANCAGNAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAG-TGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88721577|gb|CI744876.1|CI744876
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88314491|gb|CI604975.1|CI604975
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88370572|gb|CI590150.1|CI590150
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88315087|gb|CI610146.1|CI610146
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|27577186|gb|CA999880.1|CA999880
EST:     AGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: AGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88402575|gb|CI598802.1|CI598802
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88398467|gb|CI595868.1|CI595868
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88403716|gb|CI611371.1|CI611371
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88398778|gb|CI601114.1|CI601114
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88356838|gb|CI619324.1|CI619324
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88397989|gb|CI585492.1|CI585492
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
EST: gi|88392284|gb|CI612758.1|CI612758
EST:     GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTAACAG                         GGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG
genomic: GGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 67 (downstream exon)
Score: 21

GGTTCGCGGATCGCTCGGGAAGCTGGCCTCGCGCGCCCTCTCCGTCGCCGGGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgc ... ggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatttaggggcctgggctaacgcgctagggttcgtggatgtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA
               ggctaac  putative branch site (score: 21)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgctcttgcaaccccctccaccagatcccgcagattcccgcaccatattccgttcgatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggatgtgtgggtatcgcagGGCGCGGAGCTGATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC