1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgtgattgtgttcttctacttttggtttggtagagattggtggtggtgcttgttgctttcctcagcgtggtgggagtgatttgtgttgaatacctgcagGGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAG
species | Oryza sativa |
transcript | LOC_Os02g39720.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGCGGACGCGCCCGCAAAG AEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AAGGCGGACGCGCCCGCAAAGgcaagtactc ... atacctgcag-
EST: AAGGCGGACGCGCCCGCAAAG AEST: gi|29658266|gb|CB654541.1|CB654541
genomic: AAGGCGGACGCGCCCGCAAAGgcaagtactc ... atacctgcag-
EST: AAGGCGGACGCGCCCGCAAAG GGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AAGGCGGACGCGCCCGCAAAGgcaagtactc ... atacctgcagGGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCG
EST: AAGGCGGACGCGCCCGCAAAG GGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCG
genomic: AAGGCGGACGCGCCCGCAAAGgcaagtactc ... atacctgcagGGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCG
ggtgcttgttgctttcctcagcgtggtgggagtgatttgtgttgaatacctgcagGGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAG
ttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgattgtgttcttctacttttggtttggtagagattggtggtggtgcttgttgctttcctcagcgtggtgggagtgatttgtgttgaatacctgcagGGTCGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC