1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtaaggaaatgatttgactcactgtttagcatctgccttgcatttattgatgttttttacttgatccatcatcttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGAGAGAAGGTGTCTTGTGTGCTACCACTCTGTCATGCCATCTTGCCGAGGG
species | Oryza sativa |
transcript | LOC_Os02g39530.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACA GTGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAEST: gi|33682534|gb|CF310773.1|CF310773
genomic: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAgtgtaaggaa ... ttacccttagGT-T-CCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAA
EST: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACA GTGTTCCATCGAATGACTGATGGATTAAGGTGAGGGTGTTGTTCACAGATAEST: gi|87009724|gb|CI310827.1|CI310827
genomic: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAgtgtaaggaa ... ttacccttagGT-T-CCATCGAATGACTGATGGATTAGGGTGAGG-TGTTGTTCACAGATA
EST: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACA GTGTTCCATCGAATGACTGATGGATTEST: gi|88444898|gb|CI696337.1|CI696337
genomic: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAgtgtaaggaa ... ttacccttagGT-T-CCATCGAATGACTGATGGATT
EST: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACA GTGTTCCATCGAATGACTGATGGATTAGGGTGA
genomic: GATCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAgtgtaaggaa ... ttacccttagGT-T-CCATCGAATGACTGATGGATTAGGGTGA
gcatctgccttgcatttattgatgttttttacttgatccatcatcttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGAGAGAAGGTGTCTTGTGTGCTACCACTCTGTCATGCCATCTTGCCGAGGG
atcttac putative branch site (score: 42)
tcttaccctt CT-rich tract
atttattgatgttttt TA-rich tract