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...tttttgttcatattagcatagattaaagttttggatagattataagttatttgtgaatacctcatattgagactaacagtacttttttttacattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTGGTGATTCTTCCCCTTCATCAGGGCGGGCTAGCTTCAGTTCTTTGTCAG
species | Oryza sativa |
transcript | LOC_Os02g38840.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAG GTTTTGTCTCCAAAGGAACAGACCATACAGTTCATCATGTCAGGAGGATCTEST: gi|88360178|gb|CI610292.1|CI610292
genomic: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAGgttcgtttta ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAG GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTEST: gi|88336945|gb|CI627025.1|CI627025
genomic: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAGgttcgtttta ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAG GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTEST: gi|88306288|gb|CI636673.1|CI636673
genomic: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAGgttcgtttta ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAG GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: TCTGCGTGTGCTCCTCGATTTCCTGGCGCCCTGATGCGCTTGCTGTATAGgttcgtttta ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
gttatttgtgaatacctcatattgagactaacagtacttttttttacattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTGGTGATTCTTCCCCTTCATCAGGGCGGGCTAGCTTCAGTTCTTTGTCAG
gactaac putative branch site (score: 1)
cttttttttacattct putative PPT
ttttttttacattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgttcatattagcatagattaaagttttggatagattataagttatttgtgaatacctcatattgagactaacagtacttttttttacattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTGGTGATTCTTCCCCTTCATCAGGGCGGGCTAGCTTCAGTTCTTTGTCAG
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