1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttggtggtgcattcagctgaagaagtggctgtacaatgttaaggtcttctcatgtgacattttgatgtacaatgttgttttggcgtttgattttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATC
species | Oryza sativa |
transcript | LOC_Os02g35700.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAEST: gi|88584295|gb|CI701839.1|CI701839
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAEST: gi|88590970|gb|CI707873.1|CI707873
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAEST: gi|88463367|gb|CI695828.1|CI695828
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAEST: gi|88579864|gb|CI691855.1|CI691855
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAEST: gi|88468942|gb|CI696950.1|CI696950
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
EST: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGG ATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
genomic: CCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGgtaagcccca ... ttttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAA
cttctcatgtgacattttgatgtacaatgttgttttggcgtttgattttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATC
tttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtggtgcattcagctgaagaagtggctgtacaatgttaaggtcttctcatgtgacattttgatgtacaatgttgttttggcgtttgattttgggcagATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - -tgcattc
- - - - - - - -gctgaag
- - - - - - - - - - - - gtggctg
- - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt