1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttataccttgagttagtaaataccaaacaaaccagagattttgctgaggagatctactgaaagtaaactcattcagggctttattattcatattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
species | Oryza sativa |
transcript | LOC_Os02g33080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|4969136|gb|AU066040.1|AU066040
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|25800212|gb|CA756173.1|CA756173
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|58602261|gb|CK012789.1|CK012789
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|29671592|gb|CB667867.1|CB667867
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|33795740|gb|CF323739.1|CF323739
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAGEST: gi|58679024|gb|CK067711.1|CK067711
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: AGAACGTCGACACCGCGGAGAG GTTGATAAGAGAAGCTCATAAGAAAGGAGC-AACA-TGTCCTTGTTCAG
genomic: AGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
ctgaggagatctactgaaagtaaactcattcagggctttattattcatattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
tttattattcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttataccttgagttagtaaataccaaacaaaccagagattttgctgaggagatctactgaaagtaaactcattcagggctttattattcatattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA