1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttcgcactcaccgcgcgcacacaccagttcaccgaaagatgtataccgattctccaagtgaccatctcgctgtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCATTCATGGGATGGATCCCTTCGTATGGACGCTCTGCAATGACTTGCGCG
species | Oryza sativa |
transcript | LOC_Os02g32610.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCGACGCGCCCTC-CCCTCAATCCCTCTCGCATCGCTTCTGG GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCEST: gi|29660722|gb|CB656997.1|CB656997
genomic: CCGCGACGCGCCCTCGCCC-CAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCEST: gi|29680442|gb|CB676717.1|CB676717
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCEST: gi|29615687|gb|CB620699.1|CB620699
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: CTCT-GCATCGCTTCTGG GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCCACCTCEST: gi|29678549|gb|CB674824.1|CB674824
genomic: CTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
gttcaccgaaagatgtataccgattctccaagtgaccatctcgctgtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCATTCATGGGATGGATCCCTTCGTATGGACGCTCTGCAATGACTTGCGCG
ctgtctt CT-rich tract
atgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcactcaccgcgcgcacacaccagttcaccgaaagatgtataccgattctccaagtgaccatctcgctgtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTCATTCATGGGATGGATCCCTTCGTATGGACGCTCTGCAATGACTTGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA