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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgctaggtcatctttgaatacctcatcaaataactctcttgttgaatggtagtaatcctgagtataagcggctgatatattggtgtgacatttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCC

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|699721|gb|D46012.1|D46012
EST:     CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG                         GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: gi|58606436|gb|CK034469.1|CK034469
EST:     GGCGAGCAGGCTGGCTTGTGCTTGAGCTACAATCTCCGGCCCCGTCGCAG                         GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: gi|88501776|gb|CI695691.1|CI695691
EST:     CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG                         GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: gi|58673961|gb|CK062647.1|CK062647
EST:     CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG                         GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggtagtaatcctgagtataagcggctgatatattggtgtgacatttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCC
                         ggctgat  putative branch site (score: 4)
                                            cattttt  putative PPT
                            tgatatatt  TA-rich tract