1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgctaggtcatctttgaatacctcatcaaataactctcttgttgaatggtagtaatcctgagtataagcggctgatatattggtgtgacatttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCC
species | Oryza sativa |
transcript | LOC_Os02g31874.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGEST: gi|58606436|gb|CK034469.1|CK034469
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: GGCGAGCAGGCTGGCTTGTGCTTGAGCTACAATCTCCGGCCCCGTCGCAG GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGEST: gi|88501776|gb|CI695691.1|CI695691
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGEST: gi|58673961|gb|CK062647.1|CK062647
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
EST: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAG GCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
genomic: CCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGgtgatcgatc ... atttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTG
aatggtagtaatcctgagtataagcggctgatatattggtgtgacatttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCC
ggctgat putative branch site (score: 20)
cattttt putative PPT
tgatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctaggtcatctttgaatacctcatcaaataactctcttgttgaatggtagtaatcctgagtataagcggctgatatattggtgtgacatttttgcagGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCC
gtgctag
- - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggctg