1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatggttcccatcttgcatttgtgctgtcatggcgtttgtgttgggtaccttggagtattttggatttgttcttgagcatttcttgggttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAG
species | Oryza sativa |
transcript | LOC_Os02g30974.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAG GCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTCEST: gi|5005370|gb|AU070532.1|AU070532
genomic: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAGgtaatggttc ... gttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTC
EST: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAG GCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTCEST: gi|8859747|gb|AU097065.1|AU097065
genomic: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAGgtaatggttc ... gttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTC
EST: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAG GCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTC
genomic: AGAGAAAGATCGGAGAAGGATCTTTTACAGTCTCTGATGATCGGGAACAGgtaatggttc ... gttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTC
tgggtaccttggagtattttggatttgttcttgagcatttcttgggttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAG
ttcttgc CT-rich tract
agtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggttcccatcttgcatttgtgctgtcatggcgtttgtgttgggtaccttggagtattttggatttgttcttgagcatttcttgggttcttgcagGCACGAAGGAAGGAGGAGAGGACATCTGATTCCCCCAAAGTGAAGCTTCTCAGGAGTAGCATTCGTGCGTATCATGGCGACGCCGAGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA