1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atatgtaatgcttaagatttatatttatactgtttcagttaatcttcttttgcgaaccaaaaaaaaaaagtgttactcacctaaactatgccgtttgcagGTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTATTGCACAGTCAGAGGCTCCAGTTGTTGTTGTTACAGGTGCTTCCAGGGG
species | Oryza sativa |
transcript | LOC_Os02g30060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCAGCGTCCGGCCGGATCGCCGCCGCGCCGTCTCGCTCTCAGTCTCAG GTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTAEST: gi|88761708|gb|CI771264.1|CI771264
genomic: CCGCAGCGTCCGGCCGGATCGCCGCCGCGCCGTCTCGCTCTCAGTCTCAGgtaatgaccg ... ccgtttgcagGTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTA
EST: CCGCAGCGTCCGGCCGGATCGCCGCCGCGCCGTCTCGCTCTCAGTCTCAG GTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTA
genomic: CCGCAGCGTCCGGCCGGATCGCCGCCGCGCCGTCTCGCTCTCAGTCTCAGgtaatgaccg ... ccgtttgcagGTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTA
tcttttgcgaaccaaaaaaaaaaagtgttactcacctaaactatgccgtttgcagGTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTATTGCACAGTCAGAGGCTCCAGTTGTTGTTGTTACAGGTGCTTCCAGGGG
aaaaaaaaaaagtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtaatgcttaagatttatatttatactgtttcagttaatcttcttttgcgaaccaaaaaaaaaaagtgttactcacctaaactatgccgtttgcagGTGTAAGAACTCATGTTGCAGCTGTTGAACAAGCAGTGGTACAAGATGCTATTGCACAGTCAGAGGCTCCAGTTGTTGTTGTTACAGGTGCTTCCAGGGG
atatgta
- - - - tgcttaa
- - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctaaa