1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggagctatgttacaaatgtgaaatggttttactactgtctttattgaagcttgtagttttttaaggtgtgtttgttgccaacggtacttatcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAATGCTGAGAAGCGTGGGAAGCGGCAAGTGATGATCCGACCCTCATCAAA
species | Oryza sativa |
transcript | LOC_Os02g27760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|89167787|gb|CI021486.1|CI021486
genomic: AGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: GCCGCCACCGCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|88212175|gb|CI211815.1|CI211815
genomic: GCCGCCACCGCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: CGCAGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|88979174|gb|CI025676.1|CI025676
genomic: CGCAGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: GTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|87013795|gb|CI269294.1|CI269294
genomic: GTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: CCGCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|86251654|gb|CI016943.1|CI016943
genomic: CCGCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: AGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|89199067|gb|CI255333.1|CI255333
genomic: AGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: GCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAEST: gi|87018768|gb|CI254476.1|CI254476
genomic: GCCACCGCAGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
EST: AGCCTGACCGCTCGGTCTCCGGCAACCAG ACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
genomic: AGCCTGACCGCTCGGTCTCCGGCAACCAGgtgcgagtcc ... tcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACA
gaagcttgtagttttttaaggtgtgtttgttgccaacggtacttatcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAATGCTGAGAAGCGTGGGAAGCGGCAAGTGATGATCCGACCCTCATCAAA
cttatctttt CT-rich tract
ttgtagttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagctatgttacaaatgtgaaatggttttactactgtctttattgaagcttgtagttttttaaggtgtgtttgttgccaacggtacttatcttttgcagACAAAATGGTGAGAGTCAGTGTCCTCAACGATGCTCTGAAAACAATGTACAATGCTGAGAAGCGTGGGAAGCGGCAAGTGATGATCCGACCCTCATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - ctatgtt
- - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc