Sequence
atgc intronic sequence ATGC exonic sequence...aaagttactggctaggtttctttgcagaatataaatagcaccctacatgtatccttaaggattgttctggatttgtatcttatgttgtttcttatttcagATATGCTGAGAACGTGCTCATAGCATGGCGGTGAAGTCCTCATTTGTGAGGCTACAGGCCAGGGCTCAACCCTGGCTCTCACAAAAAAAAAAAAGGTCCC
Basic information
species | Oryza sativa |
transcript | LOC_Os02g26940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33795218|gb|CF323481.1|CF323481EST: GCAAATATAAAGATGACACTGCATAATTGATAATTCACTGACCACCTCAG ATATGCTGAGAACGTGCTCAT
genomic: GCAAATATAAAGATGACACTGCATAATTGATAATTCACTGACCACCTCAGgttggtgtca ... cttatttcagATATGCTGAGAACGTGCTCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtatccttaaggattgttctggatttgtatcttatgttgtttcttatttcagATATGCTGAGAACGTGCTCATAGCATGGCGGTGAAGTCCTCATTTGTGAGGCTACAGGCCAGGGCTCAACCCTGGCTCTCACAAAAAAAAAAAAGGTCCC
ttgtttcttatttc CT-rich tract
tttcttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagttactggctaggtttctttgcagaatataaatagcaccctacatgtatccttaaggattgttctggatttgtatcttatgttgtttcttatttcagATATGCTGAGAACGTGCTCATAGCATGGCGGTGAAGTCCTCATTTGTGAGGCTACAGGCCAGGGCTCAACCCTGGCTCTCACAAAAAAAAAAAAGGTCCC
- - -tactggc
- - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - ccctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt