Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgccctgcgccccgcttcctgtctcctttctctctcgtactcgatggtggcgcttgctcctttcgtctcatcctgccttcttctccctctcgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG

Basic information

species Oryza sativa
transcript LOC_Os02g21660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88362434|gb|CI623774.1|CI623774
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|5443701|gb|AU064378.2|AU064378
EST:     CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88736020|gb|CI759528.1|CI759528
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88383845|gb|CI631735.1|CI631735
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGNGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88333144|gb|CI640987.1|CI640987
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88692249|gb|CI735824.1|CI735824
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88327185|gb|CI652225.1|CI652225
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88766064|gb|CI775154.1|CI775154
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88340060|gb|CI650507.1|CI650507
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88689122|gb|CI732698.1|CI732698
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88336001|gb|CI645602.1|CI645602
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88572661|gb|CI664232.1|CI664232
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|9886123|gb|AU063055.2|AU063055
EST:     TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|218490099|gb|FG946556.1|FG946556
EST:     TCTCCG-CGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88305508|gb|CI630670.1|CI630670
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88576427|gb|CI670572.1|CI670572
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88368746|gb|CI646234.1|CI646234
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88692617|gb|CI736192.1|CI736192
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88425319|gb|CI564836.1|CI564836
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88356767|gb|CI619253.1|CI619253
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88719033|gb|CI742543.1|CI742543
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88692734|gb|CI736309.1|CI736309
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88723286|gb|CI746796.1|CI746796
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|38482495|gb|CF966529.1|CF966529
EST:     CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|218498145|gb|FG965353.1|FG965353
EST:     CCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88735618|gb|CI759126.1|CI759126
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88718306|gb|CI741395.1|CI741395
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88353931|gb|CI636129.1|CI636129
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88825647|gb|CI776212.1|CI776212
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|27554341|gb|CA998241.1|CA998241
EST:     CGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|33680145|gb|CF308384.1|CF308384
EST:     TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88388738|gb|CI683525.1|CI683525
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|33686983|gb|CF315222.1|CF315222
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|27554339|gb|CA998239.1|CA998239
EST:     CGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88721641|gb|CI744940.1|CI744940
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88571440|gb|CI662813.1|CI662813
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88335611|gb|CI642835.1|CI642835
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88463451|gb|CI695914.1|CI695914
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|2311619|gb|C27774.1|C27774
EST:     CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88395565|gb|CI613087.1|CI613087
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88393259|gb|CI616743.1|CI616743
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|218486730|gb|FG954848.1|FG954848
EST:     TCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|84117452|gb|CD151219.1|CD151219
EST:     TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|33679805|gb|CF308044.1|CF308044
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCC-CGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|58598949|gb|CK009477.1|CK009477
EST:     CTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88330376|gb|CI633583.1|CI633583
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88321995|gb|CI673145.1|CI673145
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88744419|gb|CI767779.1|CI767779
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88390251|gb|CI605704.1|CI605704
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88353959|gb|CI636157.1|CI636157
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88306485|gb|CI638275.1|CI638275
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88305476|gb|CI630638.1|CI630638
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88732191|gb|CI757039.1|CI757039
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88385240|gb|CI630341.1|CI630341
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88337662|gb|CI632164.1|CI632164
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|58595647|gb|CK006175.1|CK006175
EST:     CTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: CTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88327563|gb|CI646756.1|CI646756
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|33681949|gb|CF310188.1|CF310188
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88736704|gb|CI760212.1|CI760212
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88347793|gb|CI655146.1|CI655146
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88328199|gb|CI650010.1|CI650010
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88357511|gb|CI623565.1|CI623565
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88694638|gb|CI738676.1|CI738676
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|2275879|gb|C24856.1|C24856
EST:     TCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: TCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88725299|gb|CI748558.1|CI748558
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88338746|gb|CI660517.1|CI660517
EST:     GGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88721140|gb|CI744439.1|CI744439
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88395102|gb|CI609418.1|CI609418
EST:     GGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88742554|gb|CI766062.1|CI766062
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88581619|gb|CI698819.1|CI698819
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88416052|gb|CI594164.1|CI594164
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88348830|gb|CI631917.1|CI631917
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88347625|gb|CI634310.1|CI634310
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88724651|gb|CI747910.1|CI747910
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88307973|gb|CI646408.1|CI646408
EST:     GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: GGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88344584|gb|CI637193.1|CI637193
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGGGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88346861|gb|CI628531.1|CI628531
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGCTA-CTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCG-TACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88347133|gb|CI631213.1|CI631213
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
EST: gi|88442788|gb|CI693794.1|CI693794
EST:     AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCG                         GATCTGTGCTCGCACCACCGGCGGCGCCATGAG
genomic: AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 33 (downstream exon)
Score: 13

AGGGTTTCCTCTCCGCCGCGCCGCCTCCCTCGTACCTCGTCGCGgtaagctgcc ... cgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggcgcttgctcctttcgtctcatcctgccttcttctccctctcgctgtgcagGATCTGTGCTCGCACCACCGGCGGCGCCATGAG
       cttgctcctttcgtct  CT-rich tract