1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcatccgttactcagccgcaaactatttctccaaagtgacgatctttttcttttttcttctggaatttgcataaccctagctaggttctcttaaagttctggcttaatttgcttaataaccaatcttataagtgagggagggggactaataacagttttttttgttctaaaaaaagttaaatttctgttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTAGTATGTGAAACGGATCGATTTCCATTTGAGCAGCAGCAACTGCTGCTG
species | Oryza sativa |
transcript | LOC_Os02g21190.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88456198|gb|CI565848.1|CI565848
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88726837|gb|CI750492.1|CI750492
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88722727|gb|CI746237.1|CI746237
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|33676405|gb|CF304644.1|CF304644
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88373318|gb|CI614654.1|CI614654
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGGGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88720476|gb|CI743775.1|CI743775
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88718793|gb|CI742303.1|CI742303
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88454353|gb|CI569925.1|CI569925
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88692210|gb|CI735785.1|CI735785
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88357109|gb|CI615996.1|CI615996
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88302370|gb|CI668216.1|CI668216
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTNTGCAGTGCTCTEST: gi|88576822|gb|CI673349.1|CI673349
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88354559|gb|CI678596.1|CI678596
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88387120|gb|CI577906.1|CI577906
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88731027|gb|CI754640.1|CI754640
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88447518|gb|CI584633.1|CI584633
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTEST: gi|88570056|gb|CI661231.1|CI661231
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
EST: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCG GTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
genomic: GGCGGCGTGGGCGTGGCGATCGAGGCGAGCCGTTGCATCCGCCCTCACCGgtgagcatcc ... gttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCT
gggactaataacagttttttttgttctaaaaaaagttaaatttctgttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTAGTATGTGAAACGGATCGATTTCCATTTGAGCAGCAGCAACTGCTGCTG
tttctgtt CT-rich tract
taataacagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatccgttactcagccgcaaactatttctccaaagtgacgatctttttcttttttcttctggaatttgcataaccctagctaggttctcttaaagttctggcttaatttgcttaataaccaatcttataagtgagggagggggactaataacagttttttttgttctaaaaaaagttaaatttctgttatgtcagGTTAGATCCGTCCTCGCTAACCCAACGCCGACGAGAAGTTTGCAGTGCTCTAGTATGTGAAACGGATCGATTTCCATTTGAGCAGCAGCAACTGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT