1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaataagtaatggtaaattgcatattatgcaattgacacattacagcatcatggaaagaaaaacctaagaataatgcagcttcttgaaactatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGCATAGTTGCTTCACTGCTCCAG
species | Oryza sativa |
transcript | LOC_Os02g19420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCTAGATCCAGAACTCAAACGACATGCTCCTTCCGAGCTACGCAAG AAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGCEST: gi|88355479|gb|CI679198.1|CI679198
genomic: ATTTGCTAGATCCAGAACTCAAACGACATGCTCCTTCCGAGCTACGCAAGgtaatttata ... tatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGC
EST: ATTTGCTAGATCCAGAACTCAAACGACATGCTCCTTCCGAGCTACGCAAG AAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGCEST: gi|88589719|gb|CI708521.1|CI708521
genomic: ATTTGCTAGATCCAGAACTCAAACGACATGCTCCTTCCGAGCTACGCAAGgtaatttata ... tatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGC
EST: ATTTGCTAGATCCAGAACTCAAACGACATACTCCTTCCGAGCTACGCAAG AAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGC
genomic: ATTTGCTAGATCCAGAACTCAAACGACATGCTCCTTCCGAGCTACGCAAGgtaatttata ... tatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGC
gcatcatggaaagaaaaacctaagaataatgcagcttcttgaaactatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGCATAGTTGCTTCACTGCTCCAG
ctatttttc CT-rich tract
ttgaaactattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaataagtaatggtaaattgcatattatgcaattgacacattacagcatcatggaaagaaaaacctaagaataatgcagcttcttgaaactatttttcagAAAAGAGAGATGTTTCAAAACCTGGCTCTGCTGTTGTGGAATTCTTTTGGCATAGTTGCTTCACTGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - -ttgcata
- - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - -tacagca
- - - - - - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca