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...atgtgaggtacttgtgaaactgattcttgaggttctaaatacaaaatactgtaatatcttcatatttaaatgttaattctgttaatttctgtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGTATTTCTCCCTATAAGATCAGGAGCTTGGTGGCCGTATGCAATTCTTATC
species | Oryza sativa |
transcript | LOC_Os02g17280.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAG CACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGTEST: gi|86829914|gb|CI288588.1|CI288588
genomic: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAGgtctctctcc ... gtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGT
EST: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAG CACTTTATTCTGGCTTATAAGTTAGATAATTCTCTCGGGAATAEST: gi|88402330|gb|CI596191.1|CI596191
genomic: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAGgtctctctcc ... gtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATA
EST: GCCGGCGT-GTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAG CACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGTEST: gi|88327239|gb|CI652281.1|CI652281
genomic: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAGgtctctctcc ... gtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGT
EST: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAG CACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGT
genomic: GCCGGCGTCGTCGCCAGGAAGCCCTTCCTCGTCCTCACCCTTCTCACCAGgtctctctcc ... gtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGT
atactgtaatatcttcatatttaaatgttaattctgttaatttctgtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGTATTTCTCCCTATAAGATCAGGAGCTTGGTGGCCGTATGCAATTCTTATC
tgttaat putative branch site (score: 11)
tttctgttt CT-rich tract
taatatcttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgaggtacttgtgaaactgattcttgaggttctaaatacaaaatactgtaatatcttcatatttaaatgttaattctgttaatttctgtttgtgcagCACTTTATTCTGGCTTATAAGTTTGATAATTCTCTCGGGAATATGGAGGGTATTTCTCCCTATAAGATCAGGAGCTTGGTGGCCGTATGCAATTCTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - -gtacttg
- - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt