1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccgccctctctgtttgtgttattgaagtttcctgcattccttacatcaactgactggagttctcgcccctctttatttttcttggtttttcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAG
species | Oryza sativa |
transcript | LOC_Os02g15970.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAAEST: gi|426017|gb|D22705.1|D22705
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: CGCCCTTCTCCCGCCTATNGCGGCTGCGCCGCTTCTCGCCGGAAGCACAC TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAGEST: gi|33687072|gb|CF315311.1|CF315311
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAGEST: gi|30227453|gb|CB965345.1|CB965345
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAA
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
atcaactgactggagttctcgcccctctttatttttcttggtttttcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAG
aactgac putative branch site (score: 2)
ttctcgcccctcttta putative PPT
tttatttttcttggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccgccctctctgtttgtgttattgaagtttcctgcattccttacatcaactgactggagttctcgcccctctttatttttcttggtttttcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAGTCTACTGCGCTGCTGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT