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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggtagaacaaacattcaagtgttatgtggttgacttgatgtatcattcctaaggatctcttttgtttaagttgtaacagtatttatttttgttatcagGTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACGGCAAAAAATATATTAATGGTTATAGTTATTTGTCAATATGTACCTCGGT

Basic information

species Oryza sativa
transcript LOC_Os02g15580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685098|gb|CB681373.1|CB681373
EST:     TATCAACATATTTTCTGATTGATTTCTTAGCTGTTCTGCCCCTTCCTCAG                         GTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACG
genomic: TATCAACATATTTTCTGATTGATTTCTTAGCTGTTCTGCCCCTTCCTCAGgtacatctgc ... ttgttatcagGTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcctaaggatctcttttgtttaagttgtaacagtatttatttttgttatcagGTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACGGCAAAAAATATATTAATGGTTATAGTTATTTGTCAATATGTACCTCGGT
                           ttgtaac  putative branch site (score: 2)
                                      tttattttt  putative PPT
                              taacagtatttatttt  TA-rich tract