Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcccacccccacccccaccccccgaagaacaccccccccccccccccccgcgccgcgctctcgccttctcgtttgatggattgattgcttttttttgtgggattttttatttatttatttttggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGAT

Basic information

species Oryza sativa
transcript LOC_Os02g15550.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13165585|gb|AU174382.1|AU174382
EST:     CCCCGCCTCGCCGCTNGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: CCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|29642051|gb|CB647058.1|CB647058
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|29672898|gb|CB669173.1|CB669173
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|88306532|gb|CI671284.1|CI671284
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|29664250|gb|CB660525.1|CB660525
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|88442871|gb|CI694277.1|CI694277
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|88352695|gb|CI678715.1|CI678715
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: gi|88371982|gb|CI681499.1|CI681499
EST:     GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG                         AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggattgattgcttttttttgtgggattttttatttatttatttttggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGAT
  gattgat  putative branch site (score: 4)
                                     tttattttt  putative PPT
            ttttttttgtgggatt  TA-rich tract