1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagcccacccccacccccaccccccgaagaacaccccccccccccccccccgcgccgcgctctcgccttctcgtttgatggattgattgcttttttttgtgggattttttatttatttatttttggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGAT
species | Oryza sativa |
transcript | LOC_Os02g15550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGCCTCGCCGCTNGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|29642051|gb|CB647058.1|CB647058
genomic: CCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|29672898|gb|CB669173.1|CB669173
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|88306532|gb|CI671284.1|CI671284
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|29664250|gb|CB660525.1|CB660525
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|88442871|gb|CI694277.1|CI694277
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|88352695|gb|CI678715.1|CI678715
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGEST: gi|88371982|gb|CI681499.1|CI681499
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
EST: GCCTCCTCTCCCCGCANNNNNNNGCCTCGCCGCTCGCCACCGCGCCCCAG AGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
genomic: GCCTCCTCTCCCCGCACCCCCCCGCCTCGCCGCTCGCCACCGCGCCCCAGgttagcccac ... tggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAG
tggattgattgcttttttttgtgggattttttatttatttatttttggggtgtagAGGCTGGGAACTTCGAGGAGGAGCAGGATCCATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGAT
gattgat putative branch site (score: 22)
tttattttt putative PPT
ttttttttgtgggatt TA-rich tract