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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgtgactttcttgttagtaaaaactttattgatagtgtatgtttggtagctgtatctataatctatctattaagacataaacatatacatttggggctcagtaaatttgatgtgtgcatcctcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAA

Basic information

species Oryza sativa
transcript LOC_Os02g14600.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88589340|gb|CI707208.1|CI707208
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTG
EST: gi|88581705|gb|CI698908.1|CI698908
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTAC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTAC
EST: gi|88589511|gb|CI705399.1|CI705399
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGA
EST: gi|88325254|gb|CI675048.1|CI675048
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88419467|gb|CI686677.1|CI686677
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGA
EST: gi|88468869|gb|CI696871.1|CI696871
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTT
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTT
EST: gi|88401247|gb|CI685242.1|CI685242
EST:     CTTTTACCTCGATACTCCAACACTCCTGGCCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: CTTTTACCTCGATACTCCAACACTCCTGGCC-TAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88349229|gb|CI678204.1|CI678204
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAG
EST: gi|88586512|gb|CI704214.1|CI704214
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88589879|gb|CI708694.1|CI708694
EST:     TCTTTTACCTCGATACTCCAACACTCCTGCCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGANCTTTCCTGGTTGCCCAGCAACTTA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTA
EST: gi|88408413|gb|CI685903.1|CI685903
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGT
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGT
EST: gi|88317749|gb|CI672339.1|CI672339
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAA
EST: gi|88451696|gb|CI694459.1|CI694459
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAAC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAAC
EST: gi|88581474|gb|CI698465.1|CI698465
EST:     TCTTTTACCTCGATGCTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAG
EST: gi|88381789|gb|CI682462.1|CI682462
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88405219|gb|CI685675.1|CI685675
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGAT
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGAT
EST: gi|88325495|gb|CI675300.1|CI675300
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88334610|gb|CI676392.1|CI676392
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCC
EST: gi|88582151|gb|CI699535.1|CI699535
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCC
EST: gi|88321670|gb|CI672811.1|CI672811
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88331523|gb|CI675860.1|CI675860
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACC
EST: gi|88468830|gb|CI696830.1|CI696830
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGAC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGAC
EST: gi|88365464|gb|CI680102.1|CI680102
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAA
EST: gi|88397765|gb|CI684708.1|CI684708
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88419693|gb|CI686600.1|CI686600
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGC
EST: gi|88313649|gb|CI671781.1|CI671781
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88463619|gb|CI696089.1|CI696089
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTACTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAANTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88577344|gb|CI673920.1|CI673920
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88586518|gb|CI704221.1|CI704221
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|95101461|gb|CI693211.1|CI693211
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTG
EST: gi|88589881|gb|CI708697.1|CI708697
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTG
EST: gi|88410606|gb|CI686943.1|CI686943
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCA
EST: gi|88577243|gb|CI673807.1|CI673807
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88378980|gb|CI681806.1|CI681806
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88388728|gb|CI683515.1|CI683515
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|66922218|gb|CX109066.1|CX109066
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88388540|gb|CI683321.1|CI683321
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTT
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTT
EST: gi|88591613|gb|CI709658.1|CI709658
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGG
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGG
EST: gi|88326836|gb|CI675543.1|CI675543
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88586535|gb|CI704238.1|CI704238
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88585954|gb|CI703631.1|CI703631
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGAC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGAC
EST: gi|88580480|gb|CI697414.1|CI697414
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCC
EST: gi|88581166|gb|CI698139.1|CI698139
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTC
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTC
EST: gi|88586513|gb|CI704215.1|CI704215
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
EST: gi|88587327|gb|CI705063.1|CI705063
EST:     TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTT
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTT
EST: gi|88371971|gb|CI681487.1|CI681487
EST:     TCTTTTACCTCGATGCTCCAACACTCCTGGCCTAGTATATATCATCCAAG                         GGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA
genomic: TCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 133

CAGTGCACCGGTACATTAGTAATTCGTCGCATTATTGAGCCTCAGGGCCTTCTTTTACCTCGATACTCCAACACTCCTGGCCTAGTATATATCATCCAAGgttcgtgtga ... tcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaacatatacatttggggctcagtaaatttgatgtgtgcatcctcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAA
                            atttgat  putative branch site (score: 133)
                                        catcctctttt  putative PPT
      atatacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtgtgactttcttgttagtaaaaactttattgatagtgtatgtttggtagctgtatctataatctatctattaagacataaacatatacatttggggctcagtaaatttgatgtgtgcatcctcttttgcagGGACTGGTGTACTGGGATTGACCTTTCCTGGTTGCCCAGCAACTTACCAAAAGCAATTTAGGCATTTTGGTCTTGAAGGAGGAAGCCAAAGGCAAGGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA