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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcgcgctctttcctccctgctcgctagatctagggtttagtgttcttggccctcttttttcattccctccgtctcggtagtttaatttgtctgttgtgtttcttttccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG

Basic information

species Oryza sativa
transcript LOC_Os02g13990.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218492413|gb|FG947005.1|FG947005
EST:     GAGCCCGCACTTCTTCAACGCCGTCAATGACCGCGAGCTCTACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|29681478|gb|CB677753.1|CB677753
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|86904173|gb|CI306591.1|CI306591
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|88406774|gb|CI603968.1|CI603968
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|88445434|gb|CI584547.1|CI584547
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|86891922|gb|CI310086.1|CI310086
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|58602112|gb|CK012640.1|CK012640
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|88745945|gb|CI769305.1|CI769305
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|88740329|gb|CI763837.1|CI763837
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|88400407|gb|CI593482.1|CI593482
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|38473912|gb|CF958044.1|CF958044
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|58662231|gb|CK050911.1|CK050911
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: gi|5005008|gb|AU068325.1|AU068325
EST:     GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG                         GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattccctccgtctcggtagtttaatttgtctgttgtgtttcttttccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
                   gtttaat  putative branch site (score: 4)
                             tctgttgtgtttcttt  putative PPT
                 tagtttaattt  TA-rich tract