1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcgcgctctttcctccctgctcgctagatctagggtttagtgttcttggccctcttttttcattccctccgtctcggtagtttaatttgtctgttgtgtttcttttccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
species | Oryza sativa |
transcript | LOC_Os02g13990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCCCGCACTTCTTCAACGCCGTCAATGACCGCGAGCTCTACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|86904173|gb|CI306591.1|CI306591
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|29660695|gb|CB656970.1|CB656970
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|27553936|gb|CA997836.1|CA997836
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|88406774|gb|CI603968.1|CI603968
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|88445434|gb|CI584547.1|CI584547
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|86891922|gb|CI310086.1|CI310086
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|58602112|gb|CK012640.1|CK012640
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|88745945|gb|CI769305.1|CI769305
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|29663404|gb|CB659679.1|CB659679
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|88740329|gb|CI763837.1|CI763837
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|88400407|gb|CI593482.1|CI593482
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|38473912|gb|CF958044.1|CF958044
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|58662231|gb|CK050911.1|CK050911
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGEST: gi|5005008|gb|AU068325.1|AU068325
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
EST: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAG GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
genomic: GAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGgtttgcgcgc ... tccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
cattccctccgtctcggtagtttaatttgtctgttgtgtttcttttccttggcagGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG
gtttaat putative branch site (score: 81)
tctgttgtgtttcttt putative PPT
tagtttaattt TA-rich tract