Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaaacaccatttgcttagttgagctaaatttataaatccccatgaaatctttgcaacgaatttatgctttgttttcattttttattttaaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCCTCGGTTCAAGGCAGTTTTCTCCGATCATATACAGCCCAGCACGCCGCG

Basic information

species Oryza sativa
transcript LOC_Os02g13970.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609889|gb|CK037922.1|CK037922
EST:     TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN                         NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: gi|29626259|gb|CB631270.1|CB631270
EST:     GCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN                         NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
genomic: GCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: gi|29623795|gb|CB628806.1|CB628806
EST:     TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN                         NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: gi|58696226|gb|CK084913.1|CK084913
EST:     TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN                         NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatctttgcaacgaatttatgctttgttttcattttttattttaaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCCTCGGTTCAAGGCAGTTTTCTCCGATCATATACAGCCCAGCACGCCGCG
                                                ctttc  CT-rich tract
               aatttatgctttgttt  TA-rich tract