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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggctgctgggaattatggggcttttctacgattatttcttttaaacatgaacgaatttccatattggtttctgttgtaattttattttccaaatttagGGATTCAACCTGTTCGAGGAAGAATCAGATGACCCTCCTGCCAAAAATGGCGTGGTCGACGATCCTGATACTACCACTACAAGTGATTGCAACACTGATA

Basic information

species Oryza sativa
transcript LOC_Os02g13890.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88396249|gb|CI598361.1|CI598361
EST:     ACGACGAAGACCACGGTGGCGGCGGCGGCGATGGCATGACCGCCGTTGCG                         GGATTCAACCTGTTCGAGGAAGAATCAGATGACCCTCCTGCCAAAAATGGC
genomic: ACGACGAAGACCACGGTGGCGGCGGCGGCGATGGCATGACCGCCGTTGCGgtgagcaatc ... ccaaatttagGGATTCAACCTGTTCGAGGAAGAATCAGATGACCCTCCTGCCAAAAATGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgaacgaatttccatattggtttctgttgtaattttattttccaaatttagGGATTCAACCTGTTCGAGGAAGAATCAGATGACCCTCCTGCCAAAAATGGCGTGGTCGACGATCCTGATACTACCACTACAAGTGATTGCAACACTGATA
                                    ttttattttcc  CT-rich tract
                              ttgtaattttattttc  TA-rich tract