1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccttatggacatgctagtcaaactgtccttgtagtgttgtcatgtcatgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG
species | Oryza sativa |
transcript | LOC_Os02g12800.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|58663492|gb|CK052178.1|CK052178
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|58652610|gb|CK041290.1|CK041290
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCGAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|58599056|gb|CK009584.1|CK009584
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|33795619|gb|CF323679.1|CF323679
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|33797146|gb|CF324438.1|CF324438
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|58656426|gb|CK045106.1|CK045106
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGG-CCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTEST: gi|29678878|gb|CB675153.1|CB675153
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
EST: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC GTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
genomic: GAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCgtaagtgatt ... attggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCT
catgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG
ttgtaac putative branch site (score: 27)
tattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttatggacatgctagtcaaactgtccttgtagtgttgtcatgtcatgcacttccctaacctattttcacgctcaactttgtaacttgcattggtgtagGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -catgcta
- - - - - - - - - - - - gtccttg
- - - - - - - - - - - - - - - - - - -tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgctc