1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagatctccccgatttgcaacagctattgtgctcgcgcgattattgcttgttgcgaatcttgtttttgcggagttctttgatacatatgtaaaattttgtggtttcctcatgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAGATGGCGCTC
species | Oryza sativa |
transcript | LOC_Os02g12794.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTTCTCCCGCTGCTCG-CTCGCCTCCTCGACG ATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAEST: gi|58665444|gb|CK054130.1|CK054130
genomic: CTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
EST: GCTTCTCCCGCTGCTCG-CTCGCCTCCTCGACG ATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAEST: gi|58690781|gb|CK079468.1|CK079468
genomic: GCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
EST: GTTTCGTCTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACG ATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAEST: gi|58652482|gb|CK041162.1|CK041162
genomic: GTTTCGTCTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
EST: GTCTTGCTTCTCCCGCTGCTCG-CTCG-CTCCTCGACG ATCTGAGATCATCGAGATCGAGTGAGTGGAGCTAGGCGGCGGCTAGGGCGAEST: gi|58695432|gb|CK084119.1|CK084119
genomic: GTCTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
EST: CTTG-TTCTCCCGCTGCTCGCCTCGCCTCCTCGACG ATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAEST: gi|58680773|gb|CK069460.1|CK069460
genomic: CTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
EST: AGGGTTTCGTCTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACG ATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
genomic: AGGGTTTCGTCTTGCTTCTCCCGCTGCTCGCCTCGCCTCCTCGACGgtaagatctc ... tgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGA
ttgcggagttctttgatacatatgtaaaattttgtggtttcctcatgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAGATGGCGCTC
ctttgat putative branch site (score: 13)
tttcctcat putative PPT
tttgatacatatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatctccccgatttgcaacagctattgtgctcgcgcgattattgcttgttgcgaatcttgtttttgcggagttctttgatacatatgtaaaattttgtggtttcctcatgacgtgcagATCTGAGATCATCGAGATCGATTGAGTGGAGCTAGGCGGCGGCTAGGGCGAGATGGCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG