1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atccatcagatggatgcttcgctgctactcagtgctaaaagtataatgtagcagtggccaaagctagcataattaactgttcaattctcctccattgcagTTGCGGGTGAAATTCGCTTGAGGATTTACTTATCTAGGACAGCCATTTGCGACGAACCGAGAAACATGCCAATGCAACTTATCAATGATACACCATGCAG
species | Oryza sativa |
transcript | LOC_Os02g10630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgtagcagtggccaaagctagcataattaactgttcaattctcctccattgcagTTGCGGGTGAAATTCGCTTGAGGATTTACTTATCTAGGACAGCCATTTGCGACGAACCGAGAAACATGCCAATGCAACTTATCAATGATACACCATGCAG
aattaac putative branch site (score: 7)
ttcaattctcctcc putative PPT
ataattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccatcagatggatgcttcgctgctactcagtgctaaaagtataatgtagcagtggccaaagctagcataattaactgttcaattctcctccattgcagTTGCGGGTGAAATTCGCTTGAGGATTTACTTATCTAGGACAGCCATTTGCGACGAACCGAGAAACATGCCAATGCAACTTATCAATGATACACCATGCAG
- - - - - tggatgc
- - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctagca