1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taggcggtgtgtttcgtgcccccctgcaagttcatgcatccccaaactagatagttgatcatgttcatgctctcatcacaagcgttgtttacatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGGGCATAGTCGGGCGGGGTGATTCTCCAAGGCACACTTCACCAGCATCAAA
species | Oryza sativa |
transcript | LOC_Os02g10470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAG GGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGGEST: gi|33693673|gb|CF321912.1|CF321912
genomic: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatccccc ... acatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
EST: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAG GGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
genomic: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatccccc ... acatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
actagatagttgatcatgttcatgctctcatcacaagcgttgtttacatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGGGCATAGTCGGGCGGGGTGATTCTCCAAGGCACACTTCACCAGCATCAAA
agttgat putative branch site (score: 1)
tttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggcggtgtgtttcgtgcccccctgcaagttcatgcatccccaaactagatagttgatcatgttcatgctctcatcacaagcgttgtttacatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGGGCATAGTCGGGCGGGGTGATTCTCCAAGGCACACTTCACCAGCATCAAA
- - - -tgtgttt
- - - - - - - cgtgccc
- - - - - - - - - - -ccctgca
- - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt