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...gaaagtatcgattaaccgcctatgttcaaaactatccaagaattatgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
species | Oryza sativa |
transcript | LOC_Os02g10310.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGAT-CTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|29643533|gb|CB648540.1|CB648540
genomic: GAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGEST: gi|58654638|gb|CK043318.1|CK043318
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
EST: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG CTGATGAGCCGGTTTTGCGTGACAACGAGGCCGTGAAGAAGAAGTGCCTTG
genomic: GCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacact ... atctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTG
tgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
tctttgc CT-rich tract
ttacacttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtatcgattaaccgcctatgttcaaaactatccaagaattatgagatcctgaggtagacttacacttttttttaatgggttctctaatctttgcagCTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT