1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctctcttttaaaactgtccctaatactatgtggagggtttccagcaaggcttctttgtgccattttcccactttagaagctccaattttctgtttttcagGTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGCTTCTACAG
species | Oryza sativa |
transcript | LOC_Os02g10230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTGGCGCTCGCCCTCTCGCTCGTCGGCGGCCTCAGCACGTCCATCG GTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGCEST: gi|86904121|gb|CI304555.1|CI304555
genomic: GCTGGTGGCGCTCGCCCTCTCGCTCGTCGGCGGCCTCAGCACGTCCATCGgtatggcccc ... tgtttttcagGTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGC
EST: GCTGGTGGCGCTCGCCCTCTCGCTCGTCGGCGGCCTCAGCACGTCCATCG GTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGC
genomic: GCTGGTGGCGCTCGCCCTCTCGCTCGTCGGCGGCCTCAGCACGTCCATCGgtatggcccc ... tgtttttcagGTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGC
aaggcttctttgtgccattttcccactttagaagctccaattttctgtttttcagGTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGCTTCTACAG
ttttctgtttttc CT-rich tract
aattttctgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcttttaaaactgtccctaatactatgtggagggtttccagcaaggcttctttgtgccattttcccactttagaagctccaattttctgtttttcagGTGCGCTGTTTGTGATTTTGAATCCGACGCCTAATCTTAAGATGCTTGGGCTTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -ctgtccc
- - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - -tccagca
- - - - - - - - - - - - - - - - - - - - - - - -ggcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctcca