1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttaagaagagtagtcacacacaatatctttttatcaaggtatattcttataagaagttttcaacaagatttgcttgaaaatttgagtctaatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTGCTGCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCT
species | Oryza sativa |
transcript | LOC_Os02g10180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88407064|gb|CI581151.1|CI581151
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88407064|gb|CI581151.1|CI581151
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|58679386|gb|CK068073.1|CK068073
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGCAGEST: gi|88421491|gb|CI618615.1|CI618615
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCG-C-C-Ggtgagcatcc ... aatttagc
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCAACGAATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|88360289|gb|CI612008.1|CI612008
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|88694893|gb|CI738931.1|CI738931
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88694893|gb|CI738931.1|CI738931
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88694893|gb|CI738931.1|CI738931
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88725664|gb|CI748923.1|CI748923
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|88396806|gb|CI620139.1|CI620139
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|58664588|gb|CK053274.1|CK053274
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|58694698|gb|CK083385.1|CK083385
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGCAGEST: gi|88719860|gb|CI741795.1|CI741795
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCG-C-C-Ggtgagcatcc ... aatttagc
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGEST: gi|88397149|gb|CI593361.1|CI593361
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGG
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88397149|gb|CI593361.1|CI593361
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88397149|gb|CI593361.1|CI593361
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88390899|gb|CI611125.1|CI611125
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTEST: gi|88731190|gb|CI754803.1|CI754803
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88731190|gb|CI754803.1|CI754803
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88731190|gb|CI754803.1|CI754803
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CEST: gi|88417075|gb|CI573790.1|CI573790
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcag-
EST: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG GCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
genomic: CAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... aatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCT
tcttataagaagttttcaacaagatttgcttgaaaatttgagtctaatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTGCTGCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCT
gtctaat putative branch site (score: 33)
ttgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaagaagagtagtcacacacaatatctttttatcaaggtatattcttataagaagttttcaacaagatttgcttgaaaatttgagtctaatttagcagGCAGAACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTGCTGCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -aagaagag
- - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - -ataagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcttg