1 5' 3' |
...aaactagaatacaaatgctgatgcgtttacatcgttggttttgttgcatcctgcaaacccaaaaattcatgtttgtgaatgtgctgtgtgggcggtgtagGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGT
species | Oryza sativa |
transcript | LOC_Os02g08190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gcatcctgcaaacccaaaaattcatgtttgtgaatgtgctgtgtgggcggtgtagGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGT
aaaaattcatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactagaatacaaatgctgatgcgtttacatcgttggttttgttgcatcctgcaaacccaaaaattcatgtttgtgaatgtgctgtgtgggcggtgtagGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - atacaaa
- - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgt