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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagctaattgtattatgacacttagagtgtgatttgtggattaatactttgttgagtgtgattggtggattaatacaatgaataaccttgcatttgcagAAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCCTGTCTGGAGTGGCATGTAGTTTTCGCAAGGCTTTGTTTATGATTTTGTCGATGGCGA

Basic information

species Oryza sativa
transcript LOC_Os02g07880.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676569|gb|CF304808.1|CF304808
EST:     TCGGCTCGGATCGAATTCAAAG                         AAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCCTGTCTGGA
genomic: TCGGCTCGGATCGAATTCAAAGgtatcgctcg ... gcatttgcagAAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCCTGTCTGGA
EST: gi|571994|gb|D41505.1|D41505
EST:     CCTCCGTGTCGGCTTCGGCTCGGATCGAATTCAAAG                         AAGAGGTTGGAAACCTTGGTGGTGTANTTAGTGCCACCGCCCCTGTCTGGA
genomic: CCTCCGTGTCGGCTTCGGCTCGGATCGAATTCAAAGgtatcgctcg ... gcatttgcagAAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCCTGTCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttgttgagtgtgattggtggattaatacaatgaataaccttgcatttgcagAAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCCTGTCTGGAGTGGCATGTAGTTTTCGCAAGGCTTTGTTTATGATTTTGTCGATGGCGA
                                   gaataac  putative branch site (score: 2)
                        attaatacaatgaata  TA-rich tract