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...acacgttgctattggaaagaactttatccagtgtttatatctctagtttatgacagtgttagttgttgatgattaaaacaccattcttttcctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTGATGCAATAGCTTCAGCTCACAGTACATTCTATT
species | Oryza sativa |
transcript | LOC_Os02g07760.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAG GTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCEST: gi|33794852|gb|CF323305.1|CF323305
genomic: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAGgtattttttg ... cctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGC
EST: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAG GTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCEST: gi|218490997|gb|FG945735.1|FG945735
genomic: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAGgtattttttg ... cctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGC
EST: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAG GTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGC
genomic: GGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAGgtattttttg ... cctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGC
gtttatgacagtgttagttgttgatgattaaaacaccattcttttcctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTGATGCAATAGCTTCAGCTCACAGTACATTCTATT
tgttgat putative branch site (score: 4)
caccattcttttcctc putative PPT
atgattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacgttgctattggaaagaactttatccagtgtttatatctctagtttatgacagtgttagttgttgatgattaaaacaccattcttttcctctcttagGTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTGATGCAATAGCTTCAGCTCACAGTACATTCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA