1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtacacatctcacctagtgagctaagctcatttccttttaactctattttttgatgtgccaattctcaaggcagcttacattgtcttctcctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTGCAGACCTGGTCACAGA
species | Oryza sativa |
transcript | LOC_Os02g07350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGTGCCGGAGCCGAG GTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTEST: gi|29661946|gb|CB658221.1|CB658221
genomic: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAGgtgcgttcga ... ctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTT
EST: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAG GTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTEST: gi|58599477|gb|CK010005.1|CK010005
genomic: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAGgtgcgttcga ... ctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTT
EST: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAG GTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTT
genomic: CCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAGgtgcgttcga ... ctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTT
attttttgatgtgccaattctcaaggcagcttacattgtcttctcctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTGCAGACCTGGTCACAGA
agcttac putative branch site (score: 21)
ttgtcttctcctcatt CT-rich tract
tcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacatctcacctagtgagctaagctcatttccttttaactctattttttgatgtgccaattctcaaggcagcttacattgtcttctcctcattttagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTGCAGACCTGGTCACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - gatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcagct