1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taacacatttgattgtcacacgaaattaagtgcactggagtccatgattttagattttgcgtatgactaattaataaatgttccccttttctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCTTCAATGGAGGATTTCTACGAGACGAGAATCGATGGTGTTGATGGAGAG
species | Oryza sativa |
transcript | LOC_Os02g05630.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|5803440|gb|AI978410.1|AI978410
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: CGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|29668036|gb|CB664311.1|CB664311
genomic: CGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|58670044|gb|CK058730.1|CK058730
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|88445125|gb|CI589603.1|CI589603
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|33675133|gb|CF303372.1|CF303372
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|29686520|gb|CB682795.1|CB682795
genomic: GCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|5003494|gb|AU068643.1|AU068643
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: CGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|44671917|gb|CR285351.1|CR285351
genomic: CGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCEST: gi|29662047|gb|CB658322.1|CB658322
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
EST: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAG TGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
genomic: GAGATGGGGTTTGCCGGGGACTGCTCGCCGGTCAGCGGTGGCGGGCTCAGgtgcgttcct ... ctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGC
gattttagattttgcgtatgactaattaataaatgttccccttttctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCTTCAATGGAGGATTTCTACGAGACGAGAATCGATGGTGTTGATGGAGAG
tgttccccttttctgt CT-rich tract
tatgactaattaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacacatttgattgtcacacgaaattaagtgcactggagtccatgattttagattttgcgtatgactaattaataaatgttccccttttctgttgacagTGAAAACGGCAAGTTCAGTTATGGGTATGCAAGTGCTCCTGGGAAAAGGGCTTCAATGGAGGATTTCTACGAGACGAGAATCGATGGTGTTGATGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA