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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttctctcctcaaaataaaccaaaccctagctcgctcgctcgctcgttcgctcaccccctctcctctctagGTCGGCACCTACTTCCTTCGCAACTACTACAACCTCCTGCAGCAGAGCCCCGATGTCGTCCACCAGTTCTACAACGACGCCAGCACCATGGTCCGCGTCG

Basic information

species Oryza sativa
transcript LOC_Os02g03890.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03890.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G167932_T01 (Zea mays), 3'ss of exon 1
----------------------gtgagt-gcttctctcctcaaaataaaccaaaccctagctcgctcgctcgctcgttcgctcaccccctctcctctctagGTCGGCACCTACTTCCTTCGCAACTACTACAACCTCCTGCAGCAGAGCCCCGATGTCGTCCACCAGTTCTACAACGACGCCAGCACCATGGTCCGCGTCG
                       ||||| | || |     |    ||       |  | | |  | ||  || |   | | | |  || |  | |  | |||| || || |||||||| || |||||||||||||| ||||| || | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
gttccggtggttttcgcgtgcgatgagttgattatgcggcctggctatgggttccggtggttttcccgtgcgatgagttgattaatccgtggcttggc-agGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCCGATGTCGTCCACCAGTTCTACAGCGAAGCCAGCACCATGGTCCGCGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaccaaaccctagctcgctcgctcgctcgttcgctcaccccctctcctctctagGTCGGCACCTACTTCCTTCGCAACTACTACAACCTCCTGCAGCAGAGCCCCGATGTCGTCCACCAGTTCTACAACGACGCCAGCACCATGGTCCGCGTCG
                                cgctcac  putative branch site (score: 3)
                  ctcgctcgctcgttcg  CT-rich tract