1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaaatacgggatcgagacagtgagatttgtcattgcaaaatctatcatgtttttccccttctttgctgttcataccaggattgtttatttcacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTA
species | Oryza sativa |
transcript | LOC_Os02g03580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAG GTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAEST: gi|88720900|gb|CI744199.1|CI744199
genomic: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGgttggtgaat ... cacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGA
EST: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAG GTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAEST: gi|88301916|gb|CI667762.1|CI667762
genomic: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGgttggtgaat ... cacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGA
EST: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAG GTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAEST: gi|29683126|gb|CB679401.1|CB679401
genomic: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGgttggtgaat ... cacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGA
EST: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAG GTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGA
genomic: GAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGgttggtgaat ... cacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGA
catgtttttccccttctttgctgttcataccaggattgtttatttcacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTA
tttatttc CT-rich tract
attgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatacgggatcgagacagtgagatttgtcattgcaaaatctatcatgtttttccccttctttgctgttcataccaggattgtttatttcacccagcagGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacca